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Main Function

franchestyn()
Run the FraNchEstYN crop–disease simulation or calibration
franchestyn_batch()
Run the FraNchEstYN crop–disease simulation or calibration

Parameter Sets

cropParameters
Crop parameter sets for FraNchEstYN
diseaseParameters
Disease parameter sets for FraNchEstYN
fungicideParameters
Fungicide parameter sets for FraNchEstYN

Utilities

disable_all_calibration() enable_calibration_only() set_calibration_flags() enable_calibration()
Calibration toggles for FraNchEstYN parameter sets
parameters_to_df()
Convert a nested parameter list back into a tidy data.frame
df_to_parameters()
Convert parameter summary dataframe to FraNchEstYN parameter list

Datasets

weather_indiana
Daily weather for Indiana
reference_indiana
Indiana reference disease observations
reference_egypt
Reference dataset for Egypt, yellow rust severity and yield loss on seven wheat varieties (Sharkiya, 2013–2015)
reference_brazil
Reference wheat data from Brazil (BRILHANTE cultivar, Sertaozinho site)
reference_ethiopia
Ethiopia reference disease observations
weather_ethiopia
Daily weather for Ethiopia fungicide trial sites
management_indiana
Indiana management practices
management_brazil
Management information for BRILHANTE wheat trials in Brazil
management_ethiopia
Ethiopia management practices
cropParameters_brazil
Default crop parameters for BRILHANTE wheat (Brazil)

Internal Utilities

compute_error_metrics()
Compute error metrics for model vs reference variables (internal)